pytest discovery fails with ModuleNotFound

[kjohnsen]

Type: Bug

Behaviour

pytest discovery fails with a ModuleNotFoundError, when the module is clearly installed in my environment

Steps to reproduce:

1. Import non-standard package (but one that is installed in the environment) in tests/conftest.py
2. Click on refresh tests

Diagnostic data

Output for Python in the Output panel (View→Output, change the drop-down the upper-right of the Output panel to Python)

2024-09-18 14:18:17.711 [info] > python -m pytest -p vscode_pytest --collect-only "--rootdir=~/Dropbox (GaTech)/projects/cleo"
2024-09-18 14:18:17.711 [info] cwd: ~/Dropbox (GaTech)/projects/cleo
2024-09-18 14:18:18.046 [info] Plugin info[vscode-pytest]: Checking if rootdir is a child of a symlink.
Checking for symlink parent starting at current path:  /home/kyle/Dropbox (GaTech)/projects/cleo
Symlink found at: /home/kyle/Dropbox (GaTech)
Plugin info[vscode-pytest]: rootdir argument, /home/kyle/Dropbox (GaTech)/projects/cleo, is identified as a symlink or child of a symlink, adjusting pytest paths accordingly.

2024-09-18 14:18:18.047 [error] ImportError while loading conftest '/home/kyle/GaTech Dropbox/Kyle Johnsen/projects/cleo/tests/conftest.py'.

2024-09-18 14:18:18.060 [error] tests/conftest.py:5: in <module>
    import brian2.only as b2
E   ModuleNotFoundError: No module named 'brian2'

2024-09-18 14:18:18.105 [error] Subprocess exited unsuccessfully with exit code 4 and signal null on workspace /home/kyle/Dropbox (GaTech)/projects/cleo.
2024-09-18 14:18:18.105 [error] Subprocess exited unsuccessfully with exit code 4 and signal null on workspace /home/kyle/Dropbox (GaTech)/projects/cleo. Creating and sending error discovery payload
2024-09-18 14:18:18.105 [error] pytest test discovery error for workspace:  /home/kyle/Dropbox (GaTech)/projects/cleo 
  
 The python test process was terminated before it could exit on its own, the process errored with: Code: 4, Signal: null for workspace /home/kyle/Dropbox (GaTech)/projects/cleo

Extension version: 2024.15.2024090406
VS Code version: Code - Insiders 1.94.0-insider (a162831, 2024-09-06T12:53:19.832Z)
OS version: Windows_NT x64 10.0.22631
Modes:
Remote OS version: Linux x64 5.15.153.1-microsoft-standard-WSL2

• Python version (& distribution if applicable, e.g. Anaconda): 3.12.1
• Type of virtual environment used (e.g. conda, venv, virtualenv, etc.): Conda
• Value of the python.languageServer setting: Pylance

User Settings

languageServer: "Pylance"

testing
• pytestArgs: "<placeholder>"
• pytestEnabled: true
• autoTestDiscoverOnSaveEnabled: false

Installed Extensions

Extension Name	Extension Id	Version
autoDocstring - Python Docstring Generator	njpwerner.autodocstring	0.6.1
C/C++	ms-vscode.cpptools	1.21.6
C/C++ Extension Pack	ms-vscode.cpptools-extension-pack	1.3.0
CMake	twxs.cmake	0.0.17
CMake Tools	ms-vscode.cmake-tools	1.19.51
Code Spell Checker	streetsidesoftware.code-spell-checker	3.0.1
Color Highlight	naumovs.color-highlight	2.8.0
Even Better TOML	tamasfe.even-better-toml	0.19.2
GitHub Copilot	GitHub.copilot	1.229.1107
GitHub Copilot Chat	GitHub.copilot-chat	0.21.2024091702
GitHub Pull Requests	GitHub.vscode-pull-request-github	0.96.0
GitLens — Git supercharged	eamodio.gitlens	2024.9.1705
HTML CSS Support	ecmel.vscode-html-css	2.0.10
Insert Unicode	brunnerh.insert-unicode	0.15.1
IntelliCode	VisualStudioExptTeam.vscodeintellicode	1.3.1
IntelliCode API Usage Examples	VisualStudioExptTeam.intellicode-api-usage-examples	0.2.8
JavaScript Debugger	ms-vscode.js-debug	1.93.0
Jupyter	ms-toolsai.jupyter	2024.9.2024091301
Jupyter Cell Tags	ms-toolsai.vscode-jupyter-cell-tags	0.1.9
Jupyter Notebook Renderers	ms-toolsai.jupyter-renderers	1.0.19
Jupyter Slide Show	ms-toolsai.vscode-jupyter-slideshow	0.1.6
LaTeX Workshop	James-Yu.latex-workshop	10.3.2
Live Preview	ms-vscode.live-server	0.5.2024091601
Live Share	ms-vsliveshare.vsliveshare	1.0.5940
Markdown Preview Enhanced	shd101wyy.markdown-preview-enhanced	0.8.14
MATLAB	MathWorks.language-matlab	1.2.5
MyST-Markdown	ExecutableBookProject.myst-highlight	0.11.0
nbdev	hamelhusain.nbdev	0.0.11
Path Intellisense	christian-kohler.path-intellisense	2.9.0
Pylance	ms-python.vscode-pylance	2024.9.1
Python	ms-python.python	2024.14.1
Python Debugger	ms-python.debugpy	2024.10.0
Quarto	quarto.quarto	1.114.0
Rainbow CSV	mechatroner.rainbow-csv	3.12.0
Ruff	charliermarsh.ruff	2024.48.0
SVG	jock.svg	1.5.4
Table Visualizer for JavaScript Profiles	ms-vscode.vscode-js-profile-table	1.0.9
Tinymist Typst	myriad-dreamin.tinymist	0.11.20
Typst LSP	nvarner.typst-lsp	0.13.0

System Info

Item	Value
CPUs	Intel(R) Core(TM) i9-9980HK CPU @ 2.40GHz (16 x 2400)
GPU Status	2d_canvas: enabled canvas_oop_rasterization: enabled_on direct_rendering_display_compositor: disabled_off_ok gpu_compositing: enabled multiple_raster_threads: enabled_on opengl: enabled_on rasterization: enabled raw_draw: disabled_off_ok skia_graphite: disabled_off video_decode: enabled video_encode: enabled vulkan: disabled_off webgl: enabled webgl2: enabled webgpu: enabled webnn: disabled_off
Load (avg)	undefined
Memory (System)	31.73GB (8.73GB free)
Process Argv	--crash-reporter-id 13862219-8062-4bb8-969d-b654fdb7b5e1
Screen Reader	no
VM	0%

Item	Value
Remote	WSL: Ubuntu-22.04
OS	Linux x64 5.15.153.1-microsoft-standard-WSL2
CPUs	Intel(R) Core(TM) i9-9980HK CPU @ 2.40GHz (16 x 0)
Memory (System)	15.49GB (11.67GB free)
VM	0%

A/B Experiments

vsliv368:30146709
vspor879:30202332
vspor708:30202333
vspor363:30204092
vscod805cf:30301675
vsaa593cf:30376535
py29gd2263:31024238
c4g48928:30535728
962ge761:30841072
pythongtdpath:30726887
welcomedialog:30812478
pythonnoceb:30776497
asynctok:30898717
dsvsc014:30777825
dsvsc015:30821418
pythonmypyd1:30859725
h48ei257:31000450
pythontbext0:30879054
accentitlementst:30870582
dsvsc016:30879898
dsvsc017:30880771
dsvsc018:30880772
cppperfnew:30980852
pythonait:30973460
724cj586:31013169
a69g1124:31018687
dvdeprecation:31040973
dwnewjupytercf:31046870
nb_pkg_only:31057982
nativerepl1:31134653
refactort:31084545
pythonrstrctxt:31093868
flighttreat:31119334
wkspc-onlycs-t:31132770
nativeloc1:31118317
wkspc-ranged-t:31125599
3ad50483:31111987
jh802675:31132134
e80f6927:31120813
fje88620:31121564
notype1:31136707
b50ed353:31138333
showchatpanel:31139797
f8igb616:31140137

[eleanorjboyd]

Hi Kyle! Logs show there is a symlink and we do some path updating in that case to fix issues caused by the symlink we have seen in the past. To confirm is Symlink found at: /home/kyle/Dropbox (GaTech) a symlink? What does it map to if so? When you try this same thing from the command line is it found correct and everything? The equivalent command would be: python -m pytest --collect-only "--rootdir=~/Dropbox (GaTech)/projects/cleo" Finally if it works right from the command line, could you try printing the python path before the erroring import in your conftest.py file? Specifically looking to see if the rootdir is in it as expected or not. The code to do this would be

import sys
print(sys.path)

also go jackets (im a GT alum)

[kjohnsen]

Hi Eleanor, thanks for getting back.

• Yes, ~/Dropbox (GaTech) is a symlink to ~/GaTech Dropbox/Kyle Johnsen/
• Running the command you gave me (though I had to use $HOME instead of ~) collected all the tests without a problem
• rootdir looks like it was adjusted correctly. sys.path:

  • ['/home/kyle/GaTech Dropbox/Kyle Johnsen/projects/cleo/tests', '/home/kyle/GaTech Dropbox/Kyle Johnsen/projects/cleo', '/home/kyle/.vscode-server-insiders/extensions/ms-python.python-2024.14.1-linux-x64/python_files', '/home/kyle/miniforge3/lib/python312.zip', '/home/kyle/miniforge3/lib/python3.12', '/home/kyle/miniforge3/lib/python3.12/lib-dynload', '/home/kyle/miniforge3/lib/python3.12/site-packages', '/home/kyle/.vscode-server-insiders/extensions/ms-python.python-2024.14.1-linux-x64/python_files', '/home/kyle/.vscode-server-insiders/extensions/ms-python.python-2024.14.1-linux-x64/python_files/lib/python']
    

• I printed sys.executable and it was indeed wrong—/home/kyle/miniforge3/bin/python—using my base conda environment instead of the selected interpreter for this workspace (~/miniforge3/envs/cleo/bin/python)

Go Jackets!

[eleanorjboyd]

@anthonykim1, looks like the issue here is the right environment is not being selected, this is likely related to the other issues we have seen with conda env activation. This investigation should help solve this issue as well: #24190. Thanks!

[anthonykim1]

With #24190 fixed can you test @kjohnsen whether this issue persists?