IMPR: Modernize pre-commit

[d-v-b]

A few opportunities to improve the pre-commit hooks:

• use pyproject.toml to configure as many hooks as possible instead of relying on tool-specific config files (like .codespellrc)
• use ruff format instead of black. it's much faster.
• use ruff instead of flake8. ruff is faster.
• Apply safe linting changes immediately instead of just showing the diff. this is a faster workflow.

[github-actions]

This issue is stale because it has been open for 45 days with no activity.

[dimitri-yatsenko]

This has been implemented. The pre-commit configuration is now modernized:

Changes Made

Ruff instead of flake8 and black

- repo: https://github.com/astral-sh/ruff-pre-commit
  rev: v0.8.4
  hooks:
    - id: ruff
      args: [--fix]  # Auto-fix safe issues
      files: ^(src/|tests/)
    - id: ruff-format
      files: ^(src/|tests/)

Configuration in pyproject.toml

All tool configuration is now in pyproject.toml:

[tool.ruff]
line-length = 127
target-version = "py310"

[tool.ruff.lint]
select = ["E", "W", "F", "C90"]
ignore = ["E203", "E722"]

[tool.ruff.format]
quote-style = "double"
indent-style = "space"

[tool.codespell]
skip = ".git,*.pdf,*.svg,*.csv,*.ipynb,*.drawio"
ignore-words-list = "rever,numer,astroid"

Removed

• No .codespellrc file (config in pyproject.toml)
• No .flake8 file (replaced by ruff)
• No black (replaced by ruff-format)

Additional hooks added

• mypy for type checking
• unit tests run on pre-commit
• actionlint for GitHub Actions validation