Fix dev host stale-entry reconciliation

[ScriptedAlchemy]

Summary

• persist per-epoch top-level ownership in .agent-bundle-dev/published.json
• remove only stale manager-published entries on generation sync and Codex filesystem fallback
• restore removed and partially published entries when an epoch publication fails
• document the ownership boundary in the package, framework, diagnostics, and EN/ZH Workbench docs

Verification

• pnpm build
• pnpm typecheck
• pnpm lint
• pnpm test:unit (4,413 passed; 6 skipped)
• focused dev-host-install-manager.test.ts, dev-host-install.test.ts, host-install-proof.test.ts, and dev-live-host.test.ts
• pnpm test:integration:run --shard 1/2 (950 passed; 4 skipped)
• pnpm docs:site:build
• independent Fable change-risk review; all merge-blocking findings addressed

Closes #783

[chatgpt-codex-connector]

Codex Review Summary

This comment shows the latest Codex review activity on this pull request.

Review	Status	Commit	Review trigger
📝 Code Review	✅ Completed 2026-09-11T22:42:56.194103Z	2527933	PR opened

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[changeset-bot]

🦋 Changeset detected

Latest commit: 61d9cc8

The changes in this PR will be included in the next version bump.

This PR includes changesets to release 2 packages

Name	Type
agent-bundle	Patch
create-agent-bundle	Patch

Not sure what this means? Click here to learn what changesets are.

Click here if you're a maintainer who wants to add another changeset to this PR

[pkg-pr-new]

npm i https://pkg.pr.new/ScriptedAlchemy/agent-bundle@784

npm i https://pkg.pr.new/ScriptedAlchemy/agent-bundle/create-agent-bundle@784

npm i https://pkg.pr.new/ScriptedAlchemy/agent-bundle/rsc-markdown-stream@784

npm i https://pkg.pr.new/ScriptedAlchemy/agent-bundle/@agent-bundle/runtime@784

commit: 795fd90

[chatgpt-codex-connector]

💡 Codex Review

Here are some automated review suggestions for this pull request.

Reviewed commit: 2527933c53

ℹ️ About Codex in GitHub

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• Open a pull request for review
• Mark a draft as ready
• Comment "@codex review".

If Codex has suggestions, it will comment; otherwise it will react with 👍.

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