[WIP] Support Deepgrow 2D/3D Training#1329

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Commits on Dec 23, 2020

[WIP] Support Deepgrow 2D/3D Training
SachidanandAlle
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Remove sample train scripts from PR
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Adds an image to bounding box transform (#1326)

wyli
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Remove flake8 from requirements-dev.txt during public container image build (#1327)

IsaacYangSLA
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fixes tutorial #82 (#1331)

wyli
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1330 Refine generate_spatial_bounding_box API (#1336)

Nic-Ma
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DynUNet Torchscript Support (#1334)

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fixes params groups (#1339)

wyli
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1338 Enhance save_final in CheckpointSaver handler (#1341)

Nic-Ma
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1337 profiling tools (#1343)

charliebudd
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Hilbert transform simple layer and DetectEnvelope transform implemented. #1210. Requires torch.fft module and PyTorch 1.7.0+. (#1287)

crnbaker
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ci/cd with 1.7.1 (#1345)

wyli
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1349 Align output data type with input in NormalizeIntensity (#1352)

Nic-Ma
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fixes #1353 (#1354)

wyli
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Occ sens stride (#1356)

rijobro
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support both 2D and 3D transform for deepgrow
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1318 Update highlights 0.4 (#1325)

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Add ConvertToMultiChannelBasedOnBratsClassesd to handle BraTS18 dataset label (#1347)

IsaacYangSLA
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Add extreme points channel (#1361)

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Clean up not required items
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remove not-used args for dataset creation
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Update hausdorff metric and surface distance (#1351)

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Update changelog for 0.4.0 (#1355)

wyli
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Fix randomness in AddExtremePointsChanneld transform (#1363)

YuanTingHsieh
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Update docs for GitHub Discussion tab (#1364)

rijobro
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1346-enhance-highresnet-acti-norm (#1365)

wyli
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update weekly preview (#1366)

wyli
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adding .venv directory to ignores for flake8 and isort (#1371)

charliebudd
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AE: check lens of stride and channel match (#1372)

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adding modules to requirments-dev.txt that are needed to build the docs (#1374)

charliebudd
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[DLMED] add missing import (#1376)

Nic-Ma
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adds jpeg (#1379)

wyli
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[DLMED] add missing arg in GANTrainer (#1383)

Nic-Ma
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1198 efficient differentiable bilateral filter (#1375)

charliebudd
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update contributing and normalis* -> normaliz* (#1388)

rijobro
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Support deepgrow stats handler for detailed metrics + transforms for inference
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Fix build
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Fix coverage
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Fix optional import
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Fix optional import
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